In the Journals - Selfish Genetic Elements and Polyandry

ResearchBlogging.org

This interesting paper investigates whether there is a relationship between polyandry and selfish genetic elements, in the fruit fly Drosophila pseudoobscura

Polyandry - where females have multiple mating partners - is widespread in animals, but despite its frequency, little is known of the costs and benefits of this reproductive strategy (though this paper cites evidence that the costs of multiple mating appear to outweigh the benefits.  It is likely that the benefits lie in that polyandry gives the female a greater degree of control over paternity, via sperm competition.  There is also a possibility that selfish genetic elements may promote polyandry by correlating male fitness with sperm competition.

Selfish genetic elements are ubiquitous in extant organisms, and spread through populations by particular strategies that ensure their transmission, even where their presence may be a net cost to the organism.  Such elements include meiotic drive elements, B chromosomes and endosymbionts. These elements can cause interesting genetic effects, such as reproductive incompatility, and sex ratio distortion.  In D. pseudoobscura, a meiotic driver known as SR (Sex Ratio) is commonly found in populations.  SR is located on the X chromosome, and, while it has little obvious effect in females, in males it causes the failure of Y-bearing sperm to develop correctly.  The consequence of this is that crosses with SR-bearing males yield greatly reduced numbers of male progeny.  Of course, the other consequence is that SR males produce fewer sperm, as the Y sperm are lost.  There is therefore a disadvantage to a female that mates with an SR male, and there is no evidence that female D. pseudoobscura can avoid mating with SR males.  This paper seeks to evaluate whether SR influences female mating behaviour, perhaps by affecting chances of polyandry.

The experimental design was to propagate three populations selected from the wild as follows:

A: No SR, equal sex ratio

B: No SR, 2:1 female:male sex ratio

C: SR present, 2:1 female:male sex ratio

These three populations were maintained for 10 generations in those conditions, and then analysed for female second mating behaviour.  The three population selection conditions were selected to enable the authors to have a reasonable chance of attributing and differences in female mating behaviour to either the presence of SR, or to sex ratio.  At he end of the day, it was population C that came out with females more likely to mate more than once, and also quicker to do so.

The most likely cause for this effect is that the presence of SR in the females bred in conditions of 2:1 sex ratio selects (at other loci than SR) for altered mating behaviour that offsets the reproductive disadvantage resulting from the SR males in the population.  The increase in remating rate (2.75 days compared with 3.25 days) is within the natural variation seen in the source population.

Most segregation distorters (such as SR) function in males (or, I suppose whichever is the heterogametic sex?), and operate via loss of sperm, thereby resulting in a significant cost due to reduced fertility and sex ratio distortion, and presumably then offers a selection pressure to compensate by polyandry (remating in this case).  The authors suggest that the widespread distribution of such segregation distorters might therefore explain why polyandry is so common. 

 

T. A. R. Price, D. J. Hodgson, Z. Lewis, G. D. D. Hurst, N. Wedell (2008). Selfish Genetic Elements Promote Polyandry in a Fly Science, 322 (5905), 1241-1243 DOI: 10.1126/science.1163766

Trace fossils and giant marine protists

Gromia sphaericaThe BBC has this report on an interesting marine biology discovery, relevant to explaining trace fossils.  Unfortunately it's a bit vague (exemplified by its title - 'Grape' is key to fossil puzzle), and doesn't have a link to the original research paper in Current Biology. Personally, I think it looks less like a grape and more like a truffle.  The picture to the left shows a cleaned up example - the real things roll around the sea floor covered in mud.

Greg Laden's Blog - Giant Gromia (amoebas) may account for ancient sea floor tracks presents a rather more coherent account of the paper, and includes a citation.  Unfortunately my university doesn't have an online subscription to Current Biology.  Rats! Rats!

Another ScienceBlogs article, on Mike the Mad Biologist, Gromia sphaerica: It's a Cool...Macrobe? has a little more, but focusses on the Discovery News article.  Mike observes that there is actually a frog species that's smaller than this single-celled organism!

Why the excitement?  Well,  trace fossils are fossilised remains of animal activity - e.g., movement traces, burrowing, etc, and had always been thought to depend on presence of a bilaterally symmetrical (or, I suppose, radially symmetrical such as an echinoderm) metazoan animal.  The research team from the University of Texas (Austin) found these big protists sort of roll around and in time leave tracks very similar to those found dating from the pre-Cambrian era, well over 500 million years ago.  These trace fossils look like they are due to worm activity, but of course no corresponding fossils could be found, and they probably pre-date bilaterally symmetrical metazoans.

Unable to get my mitts on a pdf of the paper, I can't really review it in detail.  Those of you more fortunate than I can get to it via this citation:

M Matz, T Frank, N MAarshall, E Widder, S Johnsen (2008). Giant Deep-Sea Protist Produces Bilaterian-like Traces Current Biology DOI: 10.1016/j.cub.2008.10.028 

My Research: DmWRNexo is a 3'-5' exonuclease

ResearchBlogging.org

The latest publication from our project investigating a Drosophila homologue of WRN exonuclease is now online.  

Ivan Boubriak, Penelope A. Mason, David J. Clancy, Joel Dockray, Robert D. C. Saunders, Lynne S. Cox (2008). DmWRNexo is a 3′–5′ exonuclease: phenotypic and biochemical characterization of mutants of the Drosophila orthologue of human WRN exonuclease Biogerontology DOI: 10.1007/s10522-008-9181-3

Abstract The premature human ageing Werner's syndrome is caused by loss or mutation of the WRN helicase/exonuclease. We have recently identified the orthologue of the WRN exonuclease in flies, DmWRNexo, encoded by the CG7670 locus, and showed very high levels of mitotic recombination in a hypomorphic PiggyBac insertional mutant. Here, we report a novel allele of CG7670, with a point mutation resulting in the change of the conserved aspartate (229) to valine. Flies bearing this mutation show levels of mitotic recombination 20-fold higher than wild type. Molecular modelling suggests that D229 lies towards the outside of the molecule distant from the nuclease active site. We have produced recombinant protein of the D229V mutant, assayed its nuclease activity in vitro, and compared activity with that of wild type DmWRNexo and a D162A E164A double active site mutant we have created. We show for the first time that DmWRNexo has 3′-5′ exonuclease activity and that mutation within the presumptive active site disrupts exonuclease activity. Furthermore, we show that the D229V mutant has very limited exonuclease activity in vitro. Using Drosophila, we can therefore analyse WRN exonuclease from enzyme activity in vitro through to fly phenotype, and show that loss of exonuclease activity contributes to genome instability.  

Ubuntu 8.10 'Intrepid Ibex' update 2

This is my third posting on my upgrade experiences with Ubuntu 8.10 'Intrepid Ibex' (see Ubuntu 8.10 'Intrepid Ibex' upgrades and Ubuntu 8.10 'Intrepid Ibex' update.  In the second of those postings, I reported that an attempt to project from my laptop borked all my nice Compiz desktop effects

This morning I made one last ditch attempt to resolve this before reinstalling 8.10 - and succeeded. This was in part due to advice in this thread at ubuntuforums.org.

Firstly, it turned out that my system had several extraneous drivers installed. After removing them, compiz-check gave me the all-clear:

Gathering information about your system...

Distribution: Ubuntu 8.10
Desktop environment: GNOME
Graphics chip: Intel Corporation Mobile 945GM/GMS, 943/940GML Express Integrated Graphics Controller (rev 03)
Driver in use: intel
Rendering method: AIGLX

Checking if it's possible to run Compiz on your system...

Checking for texture_from_pixmap... [ OK ]
Checking for non power of two support... [ OK ]
Checking for composite extension... [ OK ]
Checking for FBConfig... [ OK ]
Checking for hardware/setup problems... [ OK ]

glxinfo spewed out lots of stuff and ended with a segmentation fault. I then investigated OpenGL through synaptic and found libgl1-mesa-glx (7.2-1ubuntu2) seemed to impact on a large swathe of stuff including compiz. So I reinstalled that. My full list of changes was the following:

Completely removed the following packages:
xorg-driver-fglrx
xserver-xorg-video-radeon

Removed the following packages:
fglrx-amdcccle
fglrx-kernel-source
xserver-xorg-video-ati

Removed the following packages:
linux-restricted-modules-2.6.22-14-generic
linux-restricted-modules-2.6.24-21-generic
nvidia-kernel-common

Removed the following packages:
xserver-xorg-video-i740
xserver-xorg-video-i810

Removed the following packages:
libgl1-mesa-dev
libglu1-mesa-dev

Reinstalled the following packages:
libgl1-mesa-glx (7.2-1ubuntu2)

After logging out and back in again, I was able to enable desktop effects again, and now I have a reasonable complement of rotating 3D cube and wobbly windows!

So all's well that ends well!

"In a comically inept move..." BT Total Censorship and the Streisand Effect

BT's major PR blunder of deleting all reference to the vile Phorm/Webwise system from its broadband support fora continues to whizz through the internet as the Streisand effect builds.

The Register weighs in - "BT silences customers over Phorm":

Adam Liversage, BT's chief press officer, told The Register: "The reason why we've done this is that the point of the forums is technical support and the WebWise threads weren't appropriate."

He said the fact that BT had chosen not only to close the threads but delete them entirely was insignificant. "It doesn't matter either way because the people who are following this will have the threads backed up in multiple copies," he said.

thinkbroadband - "BT bans discussion of Phorm on its BT Beta forums":

Whether this will turn into an own goal, depends a lot on what BT Retail does next. In the current economic climate the pressures to gain extra income from systems like Phorm will be increasing, but there will be a point at which the silent majority decide that some processes are too much of an invasion of privacy and rebel. 

EU commissioner is probably aware

PCPro -"BT bans Phorm chatter on its forums":

BT's taken the rather draconian step of banning discussion about Webwise on its support site. 

MediaPost report -"Hear No Evil: ISP Deletes Consumer Complaints In Forum":

When customers have so many concerns that they're moved to complain in writing, could BT really think that purging those comments is an effective response?  

Techwatch -  "BT bans Phorm discussion":

It seems that BT is asking for trouble as it has banned any discussion about the Phorm, or as they call it Webwise, issue on any of its customer forums.

Not only that, all threads that relate to the targeted advertising system have been deleted going to back to February of this year.

ZDnet -  "BT deletes Phorm forums"