Captain Beefheart RIP

[caption id="" align="alignleft" width="220" caption="Captain Beefheart"][/caption]I see from the BBC news website that Don Van Vliet, aka Captain Beefheart, has died (Don Van Vliet, aka 'Captain Beefheart', dies aged 69).  Very sad news.  Although Van Vliet had retired from music back in the 1980s to concentrate on painting, his music has been a major part of my life since I first listened to Trout Mask Replica several decades ago.More obituaries:The Captain Beefheart Radar StationThe Guardian - Captain Beefheart, who has died aged 69, was provocative and unpredictableLA Weekly - Top 14 Reasons Why Captain Beefheart Was a True American GeniusA sad day indeed.  Here's an old video of the Magic Band playing 'Electricity'...

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The fate of the Liberal Democrats?

Not too much activity here on Flies&Bikes lately, mostly because I've been more active posting about intelligent design over at Wonderful Life, and grumbling about politics at Posterous.  Oh and the small matter of the day job.I just thought I'd point out the current status of voting intention, as revealed by YouGov polls.  I note the spike in LibDem popularity, back in the General Election campaign, when they were at the height of their campaign (including their stated intentions about Higher Education funding).  But look how their popularity has slipped since they took on the role of patsys for the Tories.

[caption id="attachment_1217" align="aligncenter" width="568" caption="Voting intentions 2005-2010"][/caption]Visit the site for more information (click on the image).

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Goodwill to all...

The Rev Dr Peter Hearty of the excellent 'Platitude of the Day' website is clearly concerned that former Archbish Carey is rather upset at the (supposed) continued victimisation of christians in the UK*.  He thinks we should send Christmas cards to the poor old soul.

It's been suggested that Lord Carey deserves a response to his Not Ashamed campaign. He's obviously feeling a bit down, what with all this Christian persecution that's going on. I think the idea of sending him a Season's Greetings card, perhaps with a picture of some jolly penguins or some reindeer on the front, is an excellent way of cheering the old chap up.
Click over to Platitude of the day for more...I think I may well just do the same...and I'm sure Lord Carey, ensconced in the House of Lords with the others who are there merely because they are senior figures of the Church of England will enjoy all those seasonal sentiments and images.*Of course, not everyone agrees that there is any persecution.  The Bishop of Croydon disagrees (Bishop bashes Christian persecution complex).

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Favourite iPad apps

This is a listing of my favourite iPad apps:Dropbox - Absoutely invaluable for shifting files too and from the iPad; synchronise files between iPad and other computers; useful for collaborationsSqueezepad - Excellent and easy to use interface for Squeezebox Server.  Logitech's series of Squeezebox audio devices are really rather a nice way of managing and playing digital audio files.iAnnotate - read and annotate pdf files.  Aji Reader Service can be used to synchronise pdf files between Mac or PC and iAnnotate.  I use this to synch my pdf collection which I manage on the Linux and Mac notebooks using Mendeley.  Unfortunately the current version of the Mendeley iPhone/iPad app leaves quite a lot to be desired.iWork - three iWork applications have iPad versions: Pages, Numbers and KeynoteSkype -VOIP telephony via the iPad.  No video of course, but the rumoured second generation iPad may have video.  Works well on my WiFi model iPad.The Feed -Interfaces with Google Reader to help keep on top of your RSS feeds (I usually follow around 120 or more feeds).Tweetdeck - Not quite as full-featured as the desktop version, but still pretty good for emitting thoughts into the twitterverse.  Has a useful browser panel.Headspace - A kind of hybrid task manager, planning, to-do list app that is really quite versatile.  Three dimensional effects!Wolfram - Very useful if your web searches aim to pull out numerical analyses.  Reasonably good value when I got it on special offer, but I guess one could always access Wolfram Alpha via Safari.  A bit too focussed on American data.Notes Plus - very versatile note taking app, with diagrams and text.  No character recognition - for this try WritePad.  Works best with an iPad stylus.Quickoffice - read and edit MS Office documents.Penultimate - a neat and easy graphic note-taking app.  Works best with a stylus, otherwise you're finger-painting

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TalkTalk to continue invasion of customers' privacy

The BBC reports that the UK ISP TalkTalk (also known as StalkStalk) is pressing on with its intrusive malware scanning system (Talk Talk to introduce controversial virus alert system).  However a better analysis can be read over at NoDPI (Update: StalkStalk, Time to Switch ISP).Essentially TalkTalk will visit every website visited by every TalkTalk customer, and investigate it for malware.  Essentially this is an exercise in recording customers' web activity, in many cases recording URLs containing personal information.  TalkTalk customers cannot opt-out of the URL stalking.  As NoDPI put it:

Yesterday, TalkTalk announced the forthcoming relaunch of their ‘anti-malware’ service. The same system was covertly tested on TalkTalk subscribers in June/July.[...]Every URL that you visit will be captured, and used to classify the web site that you visit. The technology is supplied by Chinese company Huawei, who are commercial partners with notorious spyware company Phorm, who in turn use technology supplied by malware hackers OCS Lab in Moscow.
TalkTalk customers are advised to read the NoDPI article and judge whether their privacy would be best served by leaving for a new ISP. Personally I left BT over their dalliance with the dreadful Phorm.See also

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NewsCorp Paywalls lose Exclusives, Advertisers

Techdirt's latest story on the ongoing saga of the Murdoch media paywall rounds up the apparent effect on the ability of the Murdoch media to break stories (How Murdoch's Paywalls Meant Some News It Broke Went Unnoticed & Uncredited | Techdirt) - no-one notices.This on top of falling advertiser revenues makes me wonder how long they plan to continue the paywall.  On the other hand, they've just moved The News of the World behind the paywall.I read a multitude of sites regularly - using the Feedly front-end to Google Reader - and I probably do so just as most web users do.  I'm what you might call a 'fly-by' reader - I follow links from feeds, twitter, other websites.  I don't read on line newspapers as I do (did) print newspapers, I read single articles.  Paywalls just mean I don't go to those sites, so when the NewsCorp paywall went up, I went elsewhere.I guess the big question for NewsCorp is whether paywall income compensates for the loss of advertiser revenue.

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Buoyancy

Buoyancy, fat and metabolism

In a previous stage of my research career, I spent a considerable amount of time screening a collection of recessive lethal Drosophila strains for abnormal mitotic phenotypes. I looked for such phenotypes in squash preparations from third instar larval brains, and to get the larvae out of the fly food, we often floated them out in salt solution.  So, while scanning through an alert of new publications in PLoS Genetics, one particular title popped out at me:
A Buoyancy-Based Screen of Drosophila Larvae for Fat- Storage Mutants Reveals a Role for Sir2 in Coupling Fat Storage to Nutrient Availability
One of my mantras in the lab is that if one can think of a suitable selection, one can find any kind of mutant phenotype. In this paper, the authors have used a seemingly trivial selection system to identify mutants with a phenotype of altered fat metabolism. You can see the selection in this figure (Panel A in Figure 1):[caption id="attachment_1189" align="alignleft" width="160" caption="Selecting mutant larvae by buoyancy"][/caption]The plastic cuvette is filled with 10% sucrose, and the larvae added and left to float or sink to equilibrium.  You can see the wild type larvae in the left cuvette mostly sink, while all the adp mutant larvae float.Clearly there's a difference in buoyant density between the two genotypes.  adp is a spontaneous mutation identified many years ago.  Somewhat oddly, the authors refer to adp as "a conserved anti-obesity gene first identified as a naturally-occurring mutation in Drosophila".  This sounds kind of odd to me.  The FlyBase record for adp describes it thus:
There is experimental evidence that it is involved in the biological process: lipid metabolic process; response to desiccation; negative regulation of sequestering of triglyceride.
Still, it clearly affects lipid deposition such that adp mutants mostly float in 10% sucrose, thereby demonstrating the efficacy of the selection.The authors used this buoyancy test to screen nearly 900 strains, each bearing transposon insertions, that represent about 500 distinct loci.  66 genes were identified by this assay as affecting body fat composition - some were previously characterised as having a function related to fat physiology, and about two thirds of the genes had mammalian orthologues.

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Lunatics in charge of the asylum

Over at Grumpy Bob's Posterous - Lunatics in charge of the asylum

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The Liberal Democrats and their University student fee policy

Over at Grumpy Bob's Posterous - Is this evidence of Liberal Democrat moral bankruptcy?Yes, I think it could be construed as such.

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Harman v Clegg on Student Fees

While 50,000 students protest the proposed fees increase, this exchange in Parliament:

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